PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00040982001
Common NameGSBRNA2T00040982001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family SRS
Protein Properties Length: 346aa    MW: 38310.8 Da    PI: 6.6898
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00040982001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702223.73.6e-691142812154
               DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa..aeaaskrkrel..........k 79 
                          r+g+++CqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrer +qla++++++a+s+   +a++kr re           +
  GSBRNA2T00040982001 114 RQGGMNCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERLAQLASLQHHSASSRetPNANAKRLREVdggdndddkdH 203
                          7899*******************************************************9999988663344444444456666555444 PP

               DUF702  80 skkqsalsstklssaeskkele.tsslPeevsseavfrcvrvssvdd..geeelaYqtavsigGhvfkGiLydqGlee 154
                          +    ++ +t++++++ ++ le +++lP+evss+avfrcvrvss+++  +++e+aYqtav+igGhvfkGiLydqG+++
  GSBRNA2T00040982001 204 NGGGGSSLATRVVNTNFNSGLEaIQNLPPEVSSPAVFRCVRVSSIEEdeDDQEYAYQTAVNIGGHVFKGILYDQGPDQ 281
                          55566777888888887777761566*******************98535567***********************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051421.7E-64117280IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016239.1E-28119161IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016242.1E-26230279IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFFYLGGR DNNSSKQDHH QVDKDHHHHQ DKSNYLYLYK DEIYNTNKGF EIWPPQYFQQ  60
QQEQQQHVTP PSNFYSFGMV PSGSSSGNNN NNRSRGLYIN VVSDHEPGGF TVTRQGGMNC  120
QDCGNQAKKD CPHMRCRTCC KSRGFHCQTH VKSTWVPAAK RRERLAQLAS LQHHSASSRE  180
TPNANAKRLR EVDGGDNDDD KDHNGGGGSS LATRVVNTNF NSGLEAIQNL PPEVSSPAVF  240
RCVRVSSIEE DEDDQEYAYQ TAVNIGGHVF KGILYDQGPD QDHHHQLNLL ASTATTTNAE  300
EIAAKTAVTI AGNNNSGLIL DPSSLYPTQL NSFITGTPFF TPPRD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.292011e-147bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2052670.0GU205267.1 Brassica rapa subsp. pekinensis short internode related sequence 5 (SRS5) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013590479.10.0PREDICTED: protein SHI RELATED SEQUENCE 5
SwissprotQ9LQZ50.0SRS5_ARATH; Protein SHI RELATED SEQUENCE 5
TrEMBLA0A078JG560.0A0A078JG56_BRANA; BnaC06g43960D protein
TrEMBLA0A0D3D0X30.0A0A0D3D0X3_BRAOL; Uncharacterized protein
STRINGBra015837.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26452572
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.11e-155SHI-related sequence 5
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]